omicverse.space.Deconvolution

omicverse.space.Deconvolution#

omicverse.space.Deconvolution(adata_sp, adata_sc=None)[源代码]#

Spatial deconvolution pipeline that aligns scRNA-seq references with spatial transcriptomics.

参数:

  • adata_sp (AnnData) – Spatial transcriptomics AnnData object (spots x genes).

  • adata_sc (AnnData or None) – Single-cell reference AnnData (cells x genes) containing cell-type labels.

返回:

Initializes the deconvolution manager and backend placeholders.

返回类型:

None

示例

>>> decov = ov.space.Deconvolution(adata_sp=adata_sp, adata_sc=adata_sc)
>>> decov.deconvolution(method='Tangram', celltype_key_sc='cell_type')
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