omicverse.single.pySIMBA

omicverse.single.pySIMBA(adata, workdir='simba_result') → None

SIMBA wrapper for single-cell batch integration and graph-embedding construction.

参数:

• adata (AnnData) – Input AnnData with batch labels in obs.

• workdir (str, optional) – Directory used by SIMBA to store intermediate files and outputs.

返回:

Initializes SIMBA runtime and stores input data/workspace.

返回类型:

None

示例

>>> simba_object = ov.single.pySIMBA(adata, workdir)