omicverse.single.GLUE_pair

class omicverse.single.GLUE_pair(rna, atac)

Pair RNA and ATAC cells using GLUE latent embeddings and neighbor matching.

参数:

• rna (anndata.AnnData) – RNA AnnData with obsm['X_glue'].

• atac (anndata.AnnData) – ATAC AnnData with obsm['X_glue'].

返回:

Initializes paired-modality matching workflow.

返回类型:

None

示例

>>> pair_obj = ov.single.GLUE_pair(rna, atac)

__init__(rna, atac)

Pair the cells between RNA and ATAC using result of GLUE.

参数:

• rna (anndata.AnnData) – RNA AnnData containing obsm['X_glue'].

• atac (anndata.AnnData) – ATAC AnnData containing obsm['X_glue'].

返回类型:

None

Methods

__init__(rna, atac)	Pair the cells between RNA and ATAC using result of GLUE.
correlation()	Perform Pearson Correlation analysis in the layer of GLUE.
find_neighbor_cell([depth, cor])	Find the neighbor cells between two omics using pearson correlation.
pair_omic(omic1, omic2)	Pair the omics using the result of find_neighbor_cell.