In-silico Perturbation

In-silico gene knockout / over-expression with downstream GRN reconstruction via ov.single.perturb. Two backends — scTenifoldKnk (scRNA only) and CellOracle (RNA + optional ATAC base GRN) — share a single API and a single PerturbResult dataclass.

• In-silico gene perturbation
• In-silico perturbation with scTenifoldKnk (backend='sctenifoldknk')
• In-silico perturbation with CellOracle (backend='cell_oracle')
• Unified downstream analysis for ov.single.perturb