omicverse.datasets.dentate_gyrus

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omicverse.datasets.dentate_gyrus#

omicverse.datasets.dentate_gyrus(url='http://pklab.med.harvard.edu/velocyto/DentateGyrus/DentateGyrus.loom', filename=None)[source]#

The Dentate Gyrus dataset used in velocyto-team/velocyto-notebooks.

This data consists of 27,998 genes across 18,213 cells. Note this one http://pklab.med.harvard.edu/velocyto/DG1/10X43_1.loom: a subset of the above data.

Parameters:

  • url (str (default: 'http://pklab.med.harvard.edu/velocyto/DentateGyrus/DentateGyrus.loom'))

  • filename (Optional[str] (default: None))

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