omicverse.micro.MMvec.top_pairs

MMvec.top_pairs(n=20)

Top-n (microbe, metabolite) pairs ranked by |log-odds|.

Stacks cooccurrence() into long format and sorts by the absolute score, so the top of the list mixes strong positive and strong negative pairs (read the score column to see the sign). Returns a DataFrame with columns microbe, metabolite, score.

Parameters:

n (int (default: 20))