omicverse.alignment.dada2.learn_errors

Contents

omicverse.alignment.dada2.learn_errors#

omicverse.alignment.dada2.learn_errors(fastqs, nbases=100000000, random_state=0)[source]#

Learn a DADA2 error model from one or several filtered FASTQs.

Returns the (nuc, nuc, qual) error-rate tensor that denoise() consumes.

Parameters:

  • fastqs (Union[str, Sequence[str]])

  • nbases (int (default: 100000000))

  • random_state (int (default: 0))

Contents