omicverse.micro.ilr

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omicverse.micro.ilr#

omicverse.micro.ilr(adata, layer_out='ilr', copy=False)[source]#

ILR transform — orthonormal coordinate system after closure removal.

Stores an (n_samples × (n_features - 1)) matrix in obsm[layer_out] (not layers because ILR changes dimensionality).

Parameters:

  • adata (AnnData)

  • layer_out (str (default: 'ilr'))

  • copy (bool (default: False))

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