omicverse.single.CellVote

omicverse.single.CellVote#

class omicverse.single.CellVote(adata)[source]#

Ensemble cell-type annotation manager with multiple backends.

Parameters:

adata (AnnData) – Query single-cell AnnData to annotate.

__init__(adata)[source]#

Methods

__init__(adata)

gbi_anno()

Annotate clusters using GPTBioInsightor.

gpt_anno()

Annotate cells using GPT based approach.

popv_anno(ref_adata, ref_labels_key, ...[, ...])

Annotate cells using PopV.

scMulan_anno()

Annotate cells with the scMulan large language model.

scsa_anno()

Annotate cells using the SCSA pipeline.

vote([clusters_key, cluster_markers, ...])

Generate consensus cell-type labels by LLM arbitration.
Contents