omicverse.space.create_communication_anndata#
- omicverse.space.create_communication_anndata(adata, clustering_column, n_permutations=100, *, database_name=None, level='all', statistic='sum', use_gpu=False, seed=0)[source]#
Return cell-type-pair by interaction AnnData from existing COMMOT results.
database_name can be omitted only for one database metadata entry. level=’all’ preserves legacy selection with a warning because the columns overlap; prefer explicit level=’lr’. layers[‘means’] retains its plotting name but contains the requested statistic, recorded in uns[‘commot_summary’]. P-values test labels on a fixed graph, not experimental condition effects. Unknown database annotations remain ‘Unknown’, never invented booleans.